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	<title>Muscle Letter</title>
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	<description>Personal Notebook about Muscle Research</description>
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		<title>Muscle Letter</title>
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		<title>Possibilities for Increasing Number of Cross-bridges with Temperature</title>
		<link>http://muscletter.wordpress.com/2008/04/22/possibilities-for-increasing-number-of-cross-bridges-with-temperature/</link>
		<comments>http://muscletter.wordpress.com/2008/04/22/possibilities-for-increasing-number-of-cross-bridges-with-temperature/#comments</comments>
		<pubDate>Tue, 22 Apr 2008 16:35:04 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[force]]></category>
		<category><![CDATA[temperature]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=37</guid>
		<description><![CDATA[The Brownian motion of the HMM molecules may release more head domains from the glass surface at higher temperature without releasing the attached end. The increased thermal motion of the thin filament could reach a larger number of HMM molecules, thereby forming the increased number of cross-bridges at higher temperature. The interaction between actin and [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=37&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">The Brownian motion of the HMM molecules <span style="color:#ff0000;">may release more head domains</span> from the glass surface at higher temperature without releasing the attached end.</p>
<p align="justify">The increased thermal motion of the thin filament <span style="color:#ff0000;">could reach a larger number of HMM molecules</span>, thereby forming the increased number of cross-bridges at higher temperature.</p>
<p align="justify"><span style="color:#ff0000;"><span style="color:#ff0000;">The interaction between actin and myosin may be promoted </span></span>at higher temperatures, because it is an endothermic reaction.</p>
<p align="justify">However, whether this increase in the number of available cross-bridges is a physiological phenomenon is still an open question.</p>
<div><span style="font-size:x-small;"><em>Kawai, M., et al., Temperature change does not affect force between regulated actin filaments and heavy meromyosin in single-molecule experiments. J Physiol, 2006. 574(Pt 3): p. 877-87.</em></span></div>
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			<media:title type="html">Meishan</media:title>
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		<item>
		<title>Temperature Change Does Not Affect Force Per Cross-Bridge</title>
		<link>http://muscletter.wordpress.com/2008/04/17/temperature-change-does-not-affect-force-per-cross-bridge/</link>
		<comments>http://muscletter.wordpress.com/2008/04/17/temperature-change-does-not-affect-force-per-cross-bridge/#comments</comments>
		<pubDate>Thu, 17 Apr 2008 11:25:48 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[force]]></category>
		<category><![CDATA[temperature]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=34</guid>
		<description><![CDATA[The observed cross-bridge number increased with temperature. One possibility is that the Brownian motion may release the head portion of HMM that are inadvertently stuck to the glass surface, but it leaves the C-terminus area of HMM attached to the glass surface, so that more HMM molecules become available to interact with the actin filament [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=34&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify"><strong></strong></p>
<p align="justify"><strong>The observed cross-bridge number increased with temperature.</strong> One possibility is that the Brownian motion may release the head portion of HMM that are inadvertently stuck to the glass surface, but it leaves the C-terminus area of HMM attached to the glass surface, so that more HMM molecules become available to interact with the actin filament to generate more force at higher temperatures. However, this increase may be specific to the in vitro motility system, because the cross-bridge number is presumably maximized during the rigor induction, hence the number should not change with temperature in a physiological experiment. </p>
<p align="justify"><strong>The average force per cross-bridge does not change much with temperature in the in vitro motility assay system.</strong> The HMM molecules do not change their shape much as the temperature is increased. A change in the shape would be necessary if force per crossbridge or unbinding force were to change with the temperature, because force is presumably a result of the macromolecular architecture of the HMM and actin interrelationship. </p>
<p align="justify"><strong>Sliding velocity is expected to increase with the temperature.</strong> This is because the velocity is limited by one or two steps in the cross-bridge cycle, and their rate constants almost invariably increase with the temperature. </p>
<p align="justify"><strong>The temperature insensitivity of the single molecular force is a fundamental property of a motor protein, and the force is associated with a particular macromolecular architecture.</strong> ( Conclusion ) </p>
<p align="justify">
<div><em></em></div>
<p><em></p>
<p align="justify">Kawai, M., et al., Temperature change does not affect force between single actin filaments and HMM from rabbit muscles. Biophys J, 2000. 78(6): p. 3112-9.</p>
<p></em></p>
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			<media:title type="html">Meishan</media:title>
		</media:content>
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		<item>
		<title>Affinity of the Ca2+ Binding Sites</title>
		<link>http://muscletter.wordpress.com/2008/03/12/affinity-of-the-ca2-binding-sites/</link>
		<comments>http://muscletter.wordpress.com/2008/03/12/affinity-of-the-ca2-binding-sites/#comments</comments>
		<pubDate>Wed, 12 Mar 2008 16:13:47 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[binding sites]]></category>
		<category><![CDATA[calcium]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=28</guid>
		<description><![CDATA[There are two settings to evaluate the apparent affinity of the regulatory Ca2+ binding sites of thin filament: 1. Ca2+ dependent sliding speed of unloaded thin filaments in vitro; 2. Ca2+ activation of the thin filament-myosin S1 ATPase rate. Heller, M.J., et al., Cardiomyopathic tropomyosin mutations that increase thin filament Ca2+ sensitivity and tropomyosin N-domain [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=28&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">There are two settings to evaluate the apparent affinity of the regulatory Ca2+ binding sites of thin filament:</p>
<p>1. Ca2+ dependent sliding speed of unloaded thin filaments in vitro;</p>
<p>2. Ca2+ activation of the thin filament-myosin S1 ATPase rate.</p>
<p><i></i><i></p>
<p align="justify">Heller, M.J., et al., Cardiomyopathic tropomyosin mutations that increase thin filament Ca2+ sensitivity and tropomyosin N-domain flexibility. J Biol Chem, 2003. 278(43): p. 41742-8</p>
<p></i></p>
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			<media:title type="html">Meishan</media:title>
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		<item>
		<title>Alternative Names for alpha-actinin</title>
		<link>http://muscletter.wordpress.com/2008/02/29/alternative-names-for-alpha-actinin/</link>
		<comments>http://muscletter.wordpress.com/2008/02/29/alternative-names-for-alpha-actinin/#comments</comments>
		<pubDate>Fri, 29 Feb 2008 18:24:11 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[actin binding protein]]></category>
		<category><![CDATA[alpha-actinin]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=25</guid>
		<description><![CDATA[Actinin alpha 1 ACTN 1 ACTN1 Alpha Actinin 1 Alpha actinin cytoskeletal isoform F actin cross linking protein FLJ40884 Non muscle alpha actinin 1<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=25&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<ol>
<li>Actinin alpha 1</li>
<li>ACTN 1</li>
<li>ACTN1</li>
<li>Alpha Actinin 1</li>
<li>Alpha actinin cytoskeletal isoform</li>
<li>F actin cross linking protein</li>
<li>FLJ40884</li>
<li>Non muscle alpha actinin 1</li>
</ol>
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			<media:title type="html">Meishan</media:title>
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		<title>Force Measurement (1)</title>
		<link>http://muscletter.wordpress.com/2008/02/26/in-vitro-motility-force-measurement-1/</link>
		<comments>http://muscletter.wordpress.com/2008/02/26/in-vitro-motility-force-measurement-1/#comments</comments>
		<pubDate>Tue, 26 Feb 2008 15:47:36 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[force]]></category>
		<category><![CDATA[in vitro motility assay]]></category>
		<category><![CDATA[measurement]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=24</guid>
		<description><![CDATA[The function of muscle is to exert force and to do mechanical work. It would therefore be highly desirable to be able to measure the force exerted upon single thin filaments by thick filaments (myosin). In the normal in vitro motility assay the thin filaments are unloaded, therefore the interpretation of the results obtained from [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=24&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">The function of muscle is to exert force and to do mechanical work. It would therefore be highly desirable to be able to measure the force exerted upon single thin filaments by thick filaments (myosin).</p>
<p align="justify">In the normal in vitro motility assay the thin filaments are unloaded, therefore the interpretation of the results obtained from such systems is limited to comparisons with unloaded shortening in intact muscle.</p>
<p align="justify">The principle of novel in vitro motility assay is to place an internal load upon the thin filament to retard filament movement due to the myosin motor. This is achieved by using an actin-binding protein attached to the cover glass along with the immobilized myosin motor protein. The greater the force on an actin filament, the higher the concentration of actin-binding protein needed to stop movement.</p>
<p align="justify"><em>Bing, W., A. Knott, and S.B. Marston,</em> <i>A simple method for measuring the relative force exerted by myosin on actin filaments in the in vitro motility assay: evidence that tropomyosin and troponin increase force in single thin filaments.</i> Biochem J, 2000. <i>350 Pt 3: p. 693</i>-9</p>
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			<media:title type="html">Meishan</media:title>
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		<title>Hill Equation</title>
		<link>http://muscletter.wordpress.com/2008/02/23/hill-equation/</link>
		<comments>http://muscletter.wordpress.com/2008/02/23/hill-equation/#comments</comments>
		<pubDate>Sat, 23 Feb 2008 18:17:13 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[Hill Coefficient]]></category>
		<category><![CDATA[Hill Equation]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=22</guid>
		<description><![CDATA[The Hill equation is an equation used in enzyme characterization. In biochemistry, the binding of a ligand to a macromolecule is often enhanced if there are already other ligands present on the same macromolecule (this is known as Cooperative binding). The Hill Coefficient (n) describes the fraction of the enzyme saturated by ligand as a function of the ligand concentration; [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=22&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">The Hill equation is an equation used in enzyme characterization. In biochemistry, the binding of a <font color="#ff0000">ligand</font> to a <font color="#ff0000">macromolecule</font> is often enhanced if there are already other ligands present on the same macromolecule (this is known as <font color="#ff0000">Cooperative binding</font>).</p>
<p align="justify">The <font color="#ff0000">Hill Coefficient</font> (n) describes the fraction of the enzyme saturated by ligand as a function of the ligand concentration; it is used in <font color="#ff0000">determining the degree of cooperativity of the enzyme</font>.</p>
<ol>
<li>
<div align="justify">Positively cooperative reaction (n &gt; 1): Once one ligand molecule is bound to the enzyme, its affinity for other ligand molecules increases.</div>
</li>
<li>
<div align="justify">Negatively cooperative reaction (n &lt; 1): Once one ligand molecule is bound to the enzyme, its affinity for other ligand molecules decreases.</div>
</li>
<li>
<div align="justify">Noncooperative reaction (n = 1): The affinity of the enzyme for a ligand molecule is not dependent on whether or not other ligand molecules are already bound.</div>
</li>
</ol>
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			<media:title type="html">Meishan</media:title>
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		<title>Velocity/Force-pCa Relation</title>
		<link>http://muscletter.wordpress.com/2008/02/22/velocityforce-pca-relation/</link>
		<comments>http://muscletter.wordpress.com/2008/02/22/velocityforce-pca-relation/#comments</comments>
		<pubDate>Fri, 22 Feb 2008 16:42:10 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Fiber]]></category>
		<category><![CDATA[calcium]]></category>
		<category><![CDATA[force]]></category>
		<category><![CDATA[Velocity]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=15</guid>
		<description><![CDATA[Calcium sensitivity (pCa50): negative log of the calcium concentration at half-maximal velocity / force) of thin filament; Cooperativity (Hill Coefficient): Values are expressed as least-square regression of the fit to the Hill equation ± SE; Maximal activation (Vmax or Fmax): maximal calcium-activated velocity / of thin filament. VanBuren, P., et al., Cardiac troponin T isoforms [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=15&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify"><font color="#ff0000"></font></p>
<p align="justify"><font color="#ff0000">Calcium sensitivity</font> (pCa50): negative log of the calcium concentration at half-maximal velocity / force) of thin filament;</p>
<p align="justify"><font color="#ff0000">Cooperativity</font> (Hill Coefficient): Values are expressed as least-square regression of the fit to the Hill equation ± SE;</p>
<p align="justify"><font color="#ff0000">Maximal activation</font> (Vmax or Fmax): maximal calcium-activated velocity / of thin filament.</p>
<p align="justify"><em>VanBuren, P., et al., Cardiac troponin T isoforms demonstrate similar effects on mechanical performance in a regulated contractile system. Am J Physiol Heart Circ Physiol, 2002. 282(5): p. H1665-71</em></p>
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			<media:title type="html">Meishan</media:title>
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		<item>
		<title>Reconstitution of Thin Filaments</title>
		<link>http://muscletter.wordpress.com/2008/02/20/reconstitution-of-thin-filaments/</link>
		<comments>http://muscletter.wordpress.com/2008/02/20/reconstitution-of-thin-filaments/#comments</comments>
		<pubDate>Wed, 20 Feb 2008 15:17:18 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[reconstitution]]></category>
		<category><![CDATA[thin filaments]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=14</guid>
		<description><![CDATA[Reconstitution of thin filaments from actin, troponin, and tropomyosin was done by mixing the proteins at a concentration of 2 µM F-actin, 0.5 µM tropomyosin, and 0.48-0.5 µM troponin in F-actin buffer (4 mM imidazole, pH 7.1 at 25C), 2 mM MgCL2, 0.5 mM ATP, 3 mM NaN3, 1 mM DTT). The solution was allowed [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=14&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">Reconstitution of thin filaments from actin, troponin, and tropomyosin was done by mixing the proteins at a concentration of 2 µM F-actin, 0.5 µM tropomyosin, and 0.48-0.5 µM troponin in F-actin buffer (4 mM imidazole, pH 7.1 at 25C), 2 mM MgCL2, 0.5 mM ATP, 3 mM NaN3, 1 mM DTT). The solution was allowed to incubate overnight before use.</p>
<p><i></i><i></i><i></i><i></p>
<p align="justify">Homsher, E., et al., Calcium regulation of thin filament movement in an in vitro motility assay. Biophys J, 1996. 70(4): p. 1881-92</p>
<p></i></p>
<p align="justify">Thin filaments were then labeled with rhodamine-phalloidin at a 1:1 actin-to-phalloidin ratio in low-salt buffer (in mM: 25 KCl, 25 imidazole, 5 MgCL2, 10 DTT, and 2 EGTA, pH 7.4) and stored overnight a 4°C before use in the in vitro motility assay.</p>
<p><i></i><i></i><i></i><i></p>
<p align="justify">VanBuren, P., et al., Cardiac troponin T isoforms demonstrate similar effects on mechanical performance in a regulated contractile system. Am J Physiol Heart Circ Physiol, 2002. 282(5): p. H1665-71</p>
<p></i></p>
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			<media:title type="html">Meishan</media:title>
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		<title>Variability in Motor Velocity</title>
		<link>http://muscletter.wordpress.com/2008/02/19/variability-in-motor-velocity/</link>
		<comments>http://muscletter.wordpress.com/2008/02/19/variability-in-motor-velocity/#comments</comments>
		<pubDate>Tue, 19 Feb 2008 17:20:11 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[Motor]]></category>
		<category><![CDATA[Variability]]></category>
		<category><![CDATA[Velocity]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=13</guid>
		<description><![CDATA[The wide velocity variations observed are rather surprising and cannot be explained by simple kinetics models. A simple class of models applied to many motors assumes that discrete stepping is tightly coupled to the ATP hydrolysis cycle, occurring at a well defined average rate. In such a model, velocity variations occur because Brownian fluctuations play [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=13&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify">The wide velocity variations observed are rather surprising and cannot be explained by simple kinetics models. A simple class of models applied to many motors assumes that <font color="#ff0000">discrete stepping is tightly coupled to the ATP hydrolysis cycle, occurring at a well defined average rate</font>. In such a model, velocity variations occur because Brownian fluctuations play an important role in driving the motor transitions. In the most random possible case, referred to as a ‘‘Poisson stepper,’’ one expects an exponential distribution of waiting times between steps. …</p>
<p align="justify">We emphasize that two types of variability were observed: (i) variation in the average velocities of different complexes, referred to in the literature as ‘‘<font color="#ff0000">static disorder</font>,’’ and (ii) variations in the velocities of single complexes in time, referred to as ‘‘<font color="#ff0000">dynamic disorder</font>’’ . Although it is difficult to rule out <font color="#ff0000">protein degradation or instability</font> as a contributing factor to static disorder, such effects cannot fully explain dynamic disorder because the velocity was observed to vary both up and down in time. Degradation would be expected to only cause decreases.</p>
<p align="justify">…, Similar levels of static and dynamic disorder in enzyme kinetics have been reported in several previous single-molecule experiments… Our data show that such behavior can also occur in a more complex, multicomponent motor. Other researchers have provided evidence that such variability can be attributed to <font color="#ff0000">the </font><font color="#ff0000">existence of multiple active conformational states</font> of the enzyme complexes and <font color="#ff0000">slow interconversion between them</font>. …, suggest multiple … conformers and assembly states exhibiting <font color="#ff0000">different levels of ATPase activity</font>.</p>
<p><i></i><i></i><i></i><i></i><i></i><i></p>
<p align="justify">Fuller, D.N., et al., Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability. Proc Natl Acad Sci U S A, 2007. 104(43): p. 16868-73</p>
<p></i></p>
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			<media:title type="html">Meishan</media:title>
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		<title>The NH2-terminal Segment of TnT</title>
		<link>http://muscletter.wordpress.com/2008/02/14/9/</link>
		<comments>http://muscletter.wordpress.com/2008/02/14/9/#comments</comments>
		<pubDate>Thu, 14 Feb 2008 20:56:12 +0000</pubDate>
		<dc:creator>musclearn</dc:creator>
				<category><![CDATA[Muscle Protein]]></category>
		<category><![CDATA[tropomyosin]]></category>
		<category><![CDATA[troponin]]></category>

		<guid isPermaLink="false">http://muscletter.wordpress.com/?p=9</guid>
		<description><![CDATA[TnT, the tropomyosin (Tm) binding subunit of the troponin (Tn) complex, contains a globular COOH-terminus and a long NH2-terminal tail. The globular portion of TnT binds to troponin C (TnC; the calcium binding subunit), troponin I (TnI; the inhibitory subunit), and Tm in a calcium-dependent manner. The NH2-terminal segment of TnT (TnT-NH2+)highly charged, and binds [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=muscletter.wordpress.com&amp;blog=2437876&amp;post=9&amp;subd=muscletter&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p align="justify"><font color="#ff0000">TnT</font>, the tropomyosin (<font color="#ff0000">Tm</font>) binding subunit of the troponin (<font color="#ff0000">Tn</font>) complex, contains a globular COOH-terminus and a long NH<sub>2</sub>-terminal tail. The globular portion of TnT binds to troponin C (<font color="#ff0000">TnC</font>; the calcium binding subunit), troponin I (<font color="#ff0000">TnI</font>; the inhibitory subunit), and Tm in a calcium-dependent manner.</p>
<p align="justify">The NH<sub>2</sub>-terminal segment of TnT<font color="#ff0000"> </font>(<font color="#ff0000">TnT-NH<sub>2</sub><sup>+</sup></font>)highly charged, and binds at the NH<sub>2</sub>-terminal/COOH-terminal overlap of two adjacent Tm molecules in a calcium-independent manner, thus providing a tether for the entire Tn complex to the thin filament during muscle activation.</p>
<p align="justify">The <font color="#ff0000">TnT-NH<sub>2</sub><sup>+</sup></font>enhances the binding of the Tm to actin and thus likely facilitates the communication of movement between adjacent Tm with thin filament activation. The overlap of adjacent Tm is felt to be a critical component of thin filament-mediated cooperative activation.</p>
<div align="justify">
<address>VanBuren, P., et al.<i> Cardiac troponin T isoforms demonstrate similar effects on mechanical performance in a regulated contractile system.</i> Am J Physiol Heart Circ Physiol, 2002. 282 (5): p. H1665-71.</address>
</div>
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